Yup, the file system operations perform incorrect calculations on windows.
I will be in range of a windows system friday, and will build/debug/test the code on windows by then. This issue will be solved in the next release; until then I would advice running the 1.6 version in order to get the job done.
After the 2.1 release about a week ago, the build process of one of our multi-module projects started to fail. For some reason, the problem only occurs when run under Linux. On Windows everything works as before.
Basically, we have the following (or similar) directory structure: